Partonomy list P3F, primary language: EN, subsidiary: LA, interface: EN, work in progress

diencephalon

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Top level nervous system
Level 2 encephalon Short Extended
Current level diencephalon Short
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Partonomy list
FMA TA TID UID
Short English equivalent
Short official Latin term
62001 5263 5263
diencephalon
diencephalon
27485 7511
morphologia externa diencephali
62010 39327 5775
prethalamus (pair)
prethalamus (par)
26915 9028
prethalamic eminence (pair)
eminentia prethalamica (par)
62080 5774 5774
stria medullaris of prethalamus; stria medullaris of thalamus
stria medullaris prethalami ; stria medullaris thalami
62007 39330 5769
thalamus (pair)
thalamus (par)
74867 39333 5770
anterior thalamic tubercle (pair)
tuberculum anterius thalami (par)
62178 39336 5772
pulvinar (pair)
pulvinar (par)
62023 39339 5776
metathalamus (pair)
metathalamus (par)
62209 5777 5777
lateral geniculate body
corpus geniculatum laterale
62211 5778 5778
medial geniculate body
corpus geniculatum mediale
62009 5765 5765
epithalamus
epithalamus
62032 39348 5766
habenula (pair)
habenula (par)
62048 5792 5792
habenular commissure
commissura habenulae
78466 39351 5767
sulcus of habenula (pair)
sulcus habenulae (par) ; sulcus habenularis (par)
74868 39354 5768
habenular trigone (pair)
trigonum habenulare (par)
62033 3543 3543
pineal gland ; pineal body
glandula pinealis ; corpus pineale
9185 9185
pretectum
pretectum
62072 5794 5794
posterior commissure
commissura posterior
28867 7512
internal morphology of diencephalon
morphologia interna diencephali
83917 9033 9033
substantia grisea prethalami
62026 39357 5849
reticular nucleus of prethalamus (pair) ; reticular nucleus of thalamus (pair)
nucleus reticularis prethalami (par) ; nucleus reticularis thalami (par)
62215 39360 5904
ventral lateral geniculate nucleus (pair); pregeniculate nucleus (pair)
nucleus ventralis corporis geniculati lateralis (par) ; nucleus pregeniculatus (par)
27806 5894
nuclei of perizonal field (pair)
nuclei campi perizonalis (par)
62037 27812 5895
nucleus of medial field (pair) ; H field (pair)
nucleus campi medialis (par)
77526 27818 5896
nucleus of dorsal field (pair) ; H1 field (pair)
nucleus campi dorsalis (par)
27821 5897
nucleus of ventral field (pair) ; H2 field (pair)
nucleus campi ventralis (par)
62038 27831 5898
zona incerta (pair)
zona incerta (par)
29964 6304
dopaminergic cells of zona incerta (pair) ; dopaminergic cells A13 (pair)
cellulae dopaminergicae zonae incertae (par) ; cellulae dopaminergicae A13 (par)
83914 39363 5813
substantia grisea thalami (par)
39366 5814
anterior nuclei of thalamus (pair) ; anterior region of thalamus (pair)
nuclei anteriores thalami (par) ; regio anterior thalami (par)
62141 39369 5815
anterodorsal nucleus (pair)
nucleus anterodorsalis (par)
62142 39372 5816
anteromedial nucleus (pair)
nucleus anteromedialis (par)
62143 39375 5817
anteroventral nucleus (pair)
nucleus anteroventralis (par)
62176 26934 5819
dorsal superficial nucleus (pair); laterodorsal nucleus (pair); ERR1
nucleus dorsalis lateralis (par)
26919 5832
medial nuclei of thalamus (pair) ; medial region of thalamus (pair)
nuclei mediales thalami (par) ; regio medialis thalami (par)
62156 26922 5833
mediodorsal nucleus (pair)
nucleus mediodorsalis (par)
62162 26925 5834
parvocellular nucleus (pair); lateral nucleus (pair)
pars parvocellularis (par) ; nucleus lateralis (par)
62161 26928 5835
magnocellular nucleus (pair); medial nucleus (pair)
pars magnocellularis (par) ; nucleus medialis (par)
62160 26931 5836
paralaminar part (pair)
pars paralaminaris (par)
26938 5826
intralaminar nuclei of thalamus (pair)
nuclei intralaminares thalami (par)
26942 8628
anterior intralaminar nuclei (pair)
nuclei intralaminares anteriores (par)
62171 26956 5828
central medial nucleus (pair)
nucleus centralis medialis (par)
62172 26959 5830
paracentral nucleus (pair)
nucleus paracentralis (par)
62170 26953 5827
central lateral nucleus (pair)
nucleus centralis lateralis (par)
29002 12224
cucullar nucleus (pair)
nucleus cucullaris (par)
26946 8629
central intralaminar nuclei (pair)
nuclei intralaminares centrales (par)
62165 26962 5829
centromedian nucleus (pair)
nucleus centromedianus (par)
62166 26965 5831
parafascicular nucleus (pair)
nucleus parafascicularis (par)
26971 8630
subparafascicular nucleus (pair)
nucleus subparafascicularis (par)
26950 8631
posterior intralaminar nuclei (pair)
nuclei intralaminares posteriores (par)
62220 26974 5846
limitans nucleus (pair)
nucleus limitans (par)
62222 26977 5848
suprageniculate nucleus (pair)
nucleus suprageniculatus (par)
26981 5850
lateral nuclei of thalamus (pair) ; ventral region of thalamus (pair)
nuclei laterales thalami (par) ; regio ventralis thalami (par)
62184 26984 5863
ventral anterior nucleus (pair)
nucleus ventralis anterior (par)
26987 5864
magnocellular division (pair)
pars magnocellularis (par)
26990 5865
principal division (pair)
pars principalis (par)
26994 5860
lateral ventral nuclei (pair)
nuclei ventrales laterales (par)
26997 5861
anterior ventrolateral nucleus (pair)
nucleus ventrolateralis anterior (par)
27000 5862
posterior ventrolateral nucleus (pair)
nucleus ventrolateralis posterior (par)
27003 5855
medial ventral nuclei (pair)
nuclei ventrales mediales (par)
27006 5856
basal ventromedial nucleus (pair)
nucleus ventromedialis basalis (par)
27009 5857
principal ventromedial nucleus (pair)
nucleus ventromedialis principalis (par)
27012 5858
submedial nucleus (pair)
nucleus submedialis (par)
27015 8632
posterior ventromedial nucleus (pair)
nucleus ventromedialis posterior (par)
27019 5851
ventrobasal nuclei (pair)
nuclei ventrobasales (par)
84350 27022 5852
ventral posterolateral nucleus (pair)
nucleus ventralis posterolateralis (par)
27034 9026
anterior part (pair)
pars anterior (par)
27037 9029
posterior part (pair)
pars posterior (par)
62202 27025 5853
ventral posteromedial nucleus (pair)
nucleus ventralis posteromedialis (par)
62207 27031 5854
parvocellular part (pair)
pars parvocellularis (par)
62199 27040 5859
ventral posteroinferior nucleus (pair)
nucleus ventralis posteroinferior (par)
27044 5838
periventricular nuclei of thalamus (pair) ; midline nuclei (pair)
nuclei periventriculares thalami (par)
62151 27047 5839
parataenial nucleus (pair)
nucleus parataenialis (par)
62152 27050 5840
paraventricular nucleus of thalamus (pair)
nucleus paraventricularis thalami (par)
62153 27053 5843
medioventral nucleus (pair) ; reuniens nucleus (pair)
nucleus medioventralis (par) ; nucleus reuniens (par)
27057 5845
posterior nuclei of thalamus (pair) ; posterior region of thalamus (pair)
nuclei posteriores thalami (par) ; regio posterior thalami (par)
62177 27060 5820
lateral posterior nucleus (pair)
nucleus lateralis posterior (par)
27064 5821
pulvinar nuclei (pair)
nuclei pulvinares (par)
62180 27067 5822
anterior pulvinar nucleus (pair)
nucleus pulvinaris anterior (par)
62183 27070 5823
inferior pulvinar nucleus (pair)
nucleus pulvinaris inferior (par)
62181 27073 5824
lateral pulvinar nucleus (pair)
nucleus pulvinaris lateralis (par)
62182 27076 5825
medial pulvinar nucleus (pair)
nucleus pulvinaris medialis (par)
27692 7521
geniculate bodies (pair) ; geniculate nuclei (pair) ; geniculate region (pair)
corpora geniculata (par) ; nuclei geniculati thalami (par) ; regio geniculata (par)
62209 39342 5777
lateral geniculate body (pair)
corpus geniculatum laterale (par)
62214 39378 5900
dorsal lateral geniculate nucleus (pair)
nucleus dorsalis corporis geniculati lateralis (par)
76988 27688 5901
koniocellular layers (pair)
strata koniocellularia (par)
39381 5902
magnocellular layers (pair)
strata magnocellularia (par)
39384 5903
parvocellular layers (pair)
strata parvocellularia (par)
62211 39345 5778
medial geniculate body (pair)
corpus geniculatum mediale (par)
39387 5906
nuclei of medial geniculate body (pair)
nuclei corporis geniculati medialis (par)
62217 39390 5907
ventral principal nucleus (pair)
nucleus ventralis (par)
62216 39393 5908
dorsal nucleus (pair)
nucleus dorsalis (par)
62218 39396 5909
medial magnocellular nucleus (pair)
nucleus magnocellularis medialis (par)
83932 39399 5870
substantia alba thalami (par)
31846 9024
central roots of thalamus (pair)
radices centrales thalami (par)
62046 5782 5782
optic tract
tractus opticus
27716 8292
intrinsic tracts of thalamus (pair)
tractus proprii thalami (par)
62469 5871 5871
external medullary lamina
lamina medullaris lateralis
62470 5872 5872
internal medullary lamina
lamina medullaris medialis
5880 5880
intrathalamic fibres
fibrae intrathalamicae
5885 5885
periventricular fibres of thalamus
fibrae periventriculares thalami
26329 8307
long tracts of thalamus (pair)
tractus longi thalami (par)
27725 8311
ascending spinal tracts (pair)
tractus ascendentes medullae spinalis (par)
77766 12531 12531
anterolateral tract ; anterolateral system ; spinal lemniscus
tractus anterolateralis ; systema anterolaterale ; lemniscus spinalis
27728 8318
spinothalamic fibres
fibrae spinothalamicae
7958 7958
cervicothalamic tract
tractus cervicothalamicus
27850 8633
ascending brain stem tracts (pair)
tractus ascendentes trunci encephali (par)
83675 5298 5298
medial lemniscus
lemniscus medialis
83852 34075 8426
trigeminothalamic tracts
tractus trigeminothalamici
12170 12170
lateral trigeminothalamic tract
tractus trigeminothalamicus lateralis
5462 5462
anterior trigeminothalamic tract ; ventral trigeminothalamic tract ; trigeminal lemniscus
tractus trigeminothalamicus anterior ; tractus trigeminothalamicus ventralis ; lemniscus trigeminalis
72500 5463 5463
posterior trigeminothalamic tract ; dorsal trigeminothalamic tract
tractus trigeminothalamicus posterior ; tractus trigeminothalamicus dorsalis
8430 8430
vestibulothalamic tract
tractus vestibulothalamicus
71114 5583 5583
brachium of inferior colliculus
brachium colliculi inferioris
72417 5584 5584
brachium of superior colliculus
brachium colliculi superioris
72495 5760 5760
superior cerebellar peduncle
pedunculus cerebellaris superior
27854 8634
efferent telencephalic tracts (pair)
tractus efferentes telencephali (par)
27729 8525
corticothalamic fibres
fibrae corticothalamicae
62070 5874 5874
ansa lenticularis
ansa lenticularis
61976 5875 5875
lenticular fasciculus
fasciculus lenticularis
62065 5890 5890
thalamic fasciculus
fasciculus thalamicus
8654 8654
mammillothalamic fasciculus ; mamillothalamic tract ▲
fasciculus mammillothalamicus
27868 8635
efferent tracts of thalamus (pair) ; thalamic radiations (pair)
tractus efferentes thalami (par) ; radiationes thalamicae (par)
76976 5877 5877
anterior thalamic radiation
radiatio thalamica anterior ; radiatio anterior thalami
27730 8498
thalamofrontal fibres
fibrae thalamofrontales
76978 5878 5878
central thalamic radiation
radiatio thalamica centralis ; radiatio centralis thalami
27902 7574
thalamoparietal fibres
fibrae thalamoparietales
76980 5879 5879
inferior thalamic radiation
radiatio thalamica inferior ; radiatio inferior thalami
33980 5876
thalamotemporal fibres
fibrae thalamotemporales
62071 7618 7618
ansa peduncularis
ansa peduncularis
8500 8500
acoustic radiation
radiatio acustica
76982 5886 5886
posterior thalamic radiation
radiatio thalamica posterior ; radiatio posterior thalami
61941 5884 5884
optic radiation
radiatio optica
7923 7923
anterior bundle
fasciculus anterior
7924 7924
central bundle
fasciculus centralis
7925 7925
dorsal bundle
fasciculus dorsalis
9184 9184
substantia grisea epithalami
62372 28062 5803
lateral habenular nucleus (pair)
nucleus habenularis lateralis (par)
62373 28065 5804
medial habenular nucleus (pair)
nucleus habenularis medialis (par)
6321 6321
cholinergic cells of epithalamus ; cholinergic cells Ch7
cellulae cholinergicae epithalami ; cellulae cholinergicae Ch7
9104 9104
substantia alba epithalami
26898 8637
commissural tracts of epithalamus
tractus commissurales epithalami
62048 5792 5792
habenular commissure
commissura habenulae
26900 8638
long tracts of epithalamus
tractus longi epithalami
26902 8639
epithalamic efferent tracts
tractus efferentes epithalami
5802 5802
habenulointerpeduncular tract ; fasciculus retroflexus
tractus habenulointerpeduncularis ; fasciculus retroflexus
8640 8640
substantia grisea pretecti
62402 26851 5805
pretectal area (pair)
area pretectalis (par)
272352 26855 5806
pretectal nuclei (pair)
nuclei pretectales (par)
26858 5807
anterior pretectal nucleus (pair)
nucleus pretectalis anterior (par)
72403 26861 5808
nucleus of optic tract (pair)
nucleus tractus optici (par)
72405 26864 5809
olivary pretectal nucleus (pair)
nucleus pretectalis olivaris (par)
84355 26867 5810
posterior pretectal nucleus (pair)
nucleus pretectalis posterior (par)
68463 39402 8641
nucleus of posterior commissure (pair)
nucleus commissurae posterioris (par)
39405 8642
principal part (pair)
pars principalis (par)
39408 8643
magnocellular part (pair)
pars magnocellularis (par)
256154 26871 5638
accessory nuclei of optic tract (pair)
nuclei accessorii tractus optici (par)
77651 26874 5639
posterior accessory nucleus of optic tract (pair) ; dorsal accessory nucleus of optic tract (pair)
nucleus accessorius posterior tractus optici (par) ; nucleus accessorius dorsalis tractus optici (par)
77652 26877 5640
lateral accessory nucleus of optic tract (pair)
nucleus accessorius lateralis tractus optici (par)
77653 26880 5641
medial accessory nucleus of optic tract (pair)
nucleus accessorius medialis tractus optici (par)
8644 8644
substantia alba pretecti
28051 8645
commissural tracts of pretectum (pair)
tractus commissurales pretecti (par)
62072 5794 5794
posterior commissure
commissura posterior
28055 8647
long tracts of pretectum (pair)
tractus longi pretecti (par)
28059 8648
descending tracts of pretectum (pair)
tractus descendentes pretecti (par)
8490 8490
medial tegmental tract
tractus tegmentalis medialis
8491 8491
pretectoolivary tract
tractus pretectoolivaris
8622 8622
tegmentum prerubrale ; tegmentum diencephali
8650 8650
grey matter of prerubral tegmentum of diencephalon
substantia grisea tegmenti prerubralis
26887 8144
interstitial nucleus (pair)
nucleus interstitialis (par)
27759 8147
rostral interstitial nucleus of medial longitudinal fasciculus of telencephalon (pair)
nucleus interstitialis rostralis fasciculi longitudinalis medialis (par)
27763 8150
elliptic nucleus (pair)
nucleus ellipticus (par)
62035 25568 5893
subthalamic nucleus (pair)
nucleus subthalamicus (par)
8651 8651
white matter of prerubral tegmentum of diencephalon ; white substance of prerubral tegmentum of diencephalon
substantia alba tegmenti prerubralis
26890 8652
long tracts of prerubral tegmentum of diencephalon
tractus longi tegmenti prerubralis
26892 8653
prerubral efferent tracts
tractus efferentes prerubrales
8490 8490
medial tegmental tract
tractus tegmentalis medialis
8492 8492
prerubroolivary tract
tractus prerubroolivaris
8495 8495
descending medial longitudinal fasciculus
fasciculus longitudinalis medialis descendens
8494 8494
interstitiospinal tract
tractus interstitiospinalis
181 lines
91.2 %
98.1 %
Scientific notes
UID
Libelle of note
5263
The Diencephalon in its classic, columnar view was divided into four dorsoventrally arranged columns separated by ventricular sulci: the Epithalamus, the Dorsal thalamus, the Ventral thalamus and the Hypothalamus. Extensive embryological studies made it clear that the thalamic 'columns' are derived from transversely oriented zones, the Prosomeres (see TE). Currently, the (Caudal) Diencephalon is subdivided into three segmental units, which from caudal to rostral, contain in their alar domains the Pretectum (prosomere 1 or P1), the Epithalamus and the Thalamus (P2) and the Ventral thalamus or Prethalamus (P3). The diencephalic basal plate contains the rostral part of the Substantia nigra-VTA complex and some other nuclei, collectively forming the Diencephalic or Prerubral tegmentum between the Mesencephalon and the Hypothalamus. The entire Hypothalamus or Rostral diencephalon arises from the alar and basal components of the secondary prosencephalon. The Preoptic area is one of the subpallial developmental domains (Puelles L, Harrison M, Paxinos G, Watson C 2013 A developmental ontology for the mammalian brain based on the prosomeric model. Trends Neurosci 36:570-578).
5813
For the Thalamic nuclei, a new subdivision based on Hirai T, Jones EG (1989 A new parcellation of the human thalamus on the basis of histochemical staining. Brain Res Rev 14:1-34) and updated by Morel A, Magnin M, Jeanmonod D (1997 Multiarchitectonic and stereotactic atlas of the human thalamus. J Comp Neurol 387:618-677) is used to replace the list of terms in TA (14.1.08.603-14.1.08.658), largely a matter of a more practical grouping of nuclei. As Latin synonym the term Regio is adopted from Percheron G (2004 Thalamus. In: Paxinos G, Mai JK, eds: The Human Nervous System, 2nd ed. Elsevier, Amsterdam, pp 592-675).
8147
New term, described by Horn, AKE, Büttner-Ennever, JA (1998 Premotor neurons for vertical eye-movements in the rostral mesencephalon of monkey and man: The histological identification by parvalbumin immunostaining. J Comp Neurol 392:413-427) as a premotor nucleus for vertical eye movements.
8150
See note # 8641
8426
(Tractus trigeminothalamici): The Tractus trigeminothalamicus anterior arises in the Spinal trigeminal nucleus and joins the Medial lemniscus, whereas the Tractus trigeminothalamicus lateralis arises in the Caudal part of the Spinal trigeminal nucleus and joins the Anterolateral tract.
8430
(Tractus vestibulothalamicus): In monkeys, Vestibulothalamic projections pass via both the FLM and the Ascending tract of Deiters (Lang W, Büttner-Ennever JA, Büttner U 1979 Vestibular projections to the monkey thalamus: An autoradiographic study. Brain Res 177:3-17). Zwergal et al. (2008) demonstrated a Vestibulothalamic tract adjacent to the Medial lemniscus in humans (Zwergal A, Büttner-Ennever JA, Brandt T, Strupp M 2008 An ipsilateral vestibulothalamic tract adjacent to the medial lemniscus in humans. Brain 131:2928-2935).
8622
The basal parts of the prosomeres P1-P3 form several nuclei, previously included in the Mesencephalon (see General footnote). The rostral parts of the Substantia nigra/VTA-complex also derive from P1-P3. The term Tegmentum prerubrale is preferred as topographic term over Tegmentum diencephali.
8632
The Nucleus ventromedialis posterior (Ventromedial posterior nucleus; VMpo) is a newly discovered nucleus involved in pain perception as part of the Ventromedial nucleus (Blomqvist A, Zhang ET, Craig AD 2000 Cytoarchitectonic and immunohistochemical characterization of a specific pain and tempearature relay, the posterior portion of the ventral medial nucleus, in the human thalamus. Brain 123:601-619).
8641
Replaced from Mesencephalon; for the subdivision of this nucleus, Principal and Magnocellular parts are adopted, following Olszewski and Baxter3. The Ventral division is renamed as Nucleus ellipticus (coming from Cetacea and Proboscidea) or Nucleus of Darkschewitsch, not part of the Nucleus of the posterior commissure.
Signature
Type of list P3F
List Unit Identifier 5263
Sublist 1 5813 substantia grisea thalami 194/65 on 30.12.2021
Sublist 2 5870 substantia alba thalami 58/43 on 16.4.2018
Sublist 3 7511 morphologia externa diencephali 35/18 on 30.12.2021
Sublist 4 8622 tegmentum prerubrale 20/13 on 7.7.2019
Sublist 5 8640 substantia grisea pretecti 39/14 on 16.4.2018
Sublist 6 8644 substantia alba pretecti 12/7 on 25.3.2019
Sublist 7 9033 substantia grisea prethalami 24/9 on 3.6.2018
Sublist 8 9104 substantia alba epithalami 5/6 on 16.4.2018
Sublist 9 9184 substantia grisea epithalami 7/4 on 16.4.2018
Subtotals subchildren 394 subunits 179
Proper children 10
Number of children 404 (validated)
Proper units 2
Number of units 181 (validated)
Signature 2905 (validated since 30.12.2021)
Date: 31.12.2021